Introduction | Installation | Install from CRAN | Install from Github | Load the package | Simple example | Preprocessing | Load data | Correlated meta-analysis | Fisher's method | Example with missing samples | Session info | References
Package: corrmeta 1.0.1
corrmeta: Correlated Meta-Analysis
Performs Correlated Meta-Analysis ('corrmeta') across multiple OMIC scans, accounting for hidden non-independencies between elements of the scans due to overlapping samples, related samples, or other information. For more information about the method, refer to the paper Province MA. (2013) <doi:10.1142/9789814447973_0023>.
Authors:
corrmeta_1.0.1.tar.gz
corrmeta_1.0.1.zip(r-4.7-any)corrmeta_1.0.1.zip(r-4.6-any)corrmeta_1.0.1.zip(r-4.5-any)
corrmeta_1.0.1.tgz(r-4.6-any)corrmeta_1.0.1.tgz(r-4.5-any)
corrmeta_1.0.1.tar.gz(r-4.7-any)corrmeta_1.0.1.tar.gz(r-4.6-any)
corrmeta_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
corrmeta/json (API)
| # Install 'corrmeta' in R: |
| install.packages('corrmeta', repos = c('https://wsjung.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/wsjung/corrmeta/issues
Datasets:
- snp_example - Example SNP summary dataset
- snp_example_missing - Example SNP summary dataset with missing values
geneticsgenomewideassociationsnpstatisticalmethodsoftware
Last updated from:5b32ed1b2a. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 130 | ||
| source / vignettes | OK | 175 | ||
| linux-release | OK | 121 | ||
| macos-release | OK | 103 | ||
| macos-oldrel | OK | 125 | ||
| windows-devel | OK | 83 | ||
| windows-release | OK | 54 | ||
| windows-oldrel | OK | 66 | ||
| wasm-release | OK | 89 |
Exports:fishpgenerate_random_p_valuespolycorrpvalues_to_zscorestetracorr
Dependencies:admiscclicpp11dplyrgenericsgluelatticelifecyclemagrittrMatrixmvtnormpillarpkgconfigpolycorpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate Fisher's method p-value and meta-analysis statistics | fishp |
| Generates a list of random p-values with mixed significant and insignificant values | generate_random_p_values |
| Calculate Polychoric Correlations | polycorr |
| Convert P-values to Z-scores | pvalues_to_zscores |
| Example SNP summary dataset | snp_example |
| Example SNP summary dataset with missing values | snp_example_missing |
| Calculate Tetrachoric Correlations | tetracorr |