{ "_id": "6a14015dacfb0bcc41d38384", "Package": "corrmeta", "Title": "Correlated Meta-Analysis", "Version": "1.0.1", "Authors@R": "c(person(\"Woo Seok\",\"Jung\", role = c(\"aut\",\"cre\"), email = \"jungw@wustl.edu\"),\nperson(\"Michael\",\"Province\", role = c(\"aut\",\"cph\"), email = \"mprovince@wustl.edu\"))", "Maintainer": "Woo Seok Jung ", "Description": "Performs Correlated Meta-Analysis ('corrmeta') across\nmultiple OMIC scans, accounting for hidden non-independencies\nbetween elements of the scans due to overlapping samples,\nrelated samples, or other information. For more information\nabout the method, refer to the paper Province MA. (2013)\n.", "biocViews": "Genetics, GenomeWideAssociation, SNP, StatisticalMethod,\nSoftware", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "LazyData": "true", "Config/testthat/edition": "3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-25 07:56:29 UTC", "User": "root" }, "Author": "Woo Seok Jung [aut, cre], Michael Province [aut, cph]", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://wsjung.r-universe.dev", "Date/Publication": "2025-10-24 18:20:33 UTC", "RemoteUrl": "https://github.com/wsjung/corrmeta", "RemoteRef": "HEAD", "RemoteSha": "5b32ed1b2af14d19718dc4f87c666655615ac4b6", "MD5sum": "c875e81f42dc47ddc8545e58b0244eca", "_user": "wsjung", "_type": "src", "_file": "corrmeta_1.0.1.tar.gz", "_fileid": "e2afc484b206a5ec7aca1d16ec8934017d19e8cf14b349d9766a07c6f556d66a", "_filesize": 128576, "_sha256": "e2afc484b206a5ec7aca1d16ec8934017d19e8cf14b349d9766a07c6f556d66a", "_created": "2026-05-25T07:56:29.000Z", "_published": "2026-05-25T07:59:25.815Z", "_distro": "noble", "_jobs": [ { "job": 77677091291, "time": 129, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7194142763" }, { "job": 77677091351, "time": 122, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7194140927" }, { "job": 77677091330, "time": 146, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7194139601" }, { "job": 77677091294, "time": 117, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7194135587" }, { "job": 77676727443, "time": 172, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7194108462" }, { "job": 77677091285, "time": 106, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7194137408" }, { "job": 77677091298, "time": 88, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7194133456" }, { "job": 77677091371, "time": 85, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7194132783" }, { "job": 77677091305, "time": 73, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7194129310" } ], "_buildurl": "https://github.com/r-universe/wsjung/actions/runs/26389847301", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/wsjung/corrmeta", "_commit": { "id": "5b32ed1b2af14d19718dc4f87c666655615ac4b6", "author": "Woo Seok Jung ", "committer": "Woo Seok Jung ", "message": "update readme\n", "time": 1761330033 }, "_maintainer": { "name": "Woo Seok Jung", "email": "jungw@wustl.edu", "login": "wsjung", "description": "", "uuid": 13112251 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "dplyr", "role": "Imports" }, { "package": "polycor", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "qpdf", "role": "Suggests" } ], "_owner": "wsjung", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-43", "n": 4 } ], "_tags": [ { "name": "v1.0.1", "date": "2025-10-24" } ], "_topics": [ "genetics", "genomewideassociation", "snp", "statisticalmethod", "software" ], "_stars": 2, "_contributors": [ { "user": "wsjung", "count": 17, "uuid": 13112251 } ], "_userbio": { "uuid": 13112251, "type": "user", "name": "Woo Jung" }, "_downloads": { "count": 227, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/corrmeta" }, "_devurl": "https://github.com/wsjung/corrmeta", "_searchresults": 2, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/corrmeta.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/wsjung/corrmeta", "_realowner": "wsjung", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2024-03-08" }, { "version": "1.0.1", "date": "2025-10-24" } ], "_exports": [ "fishp", "generate_random_p_values", "polycorr", "pvalues_to_zscores", "tetracorr" ], "_datasets": [ { "name": "snp_example", "title": "Example SNP summary dataset", "object": "snp_example", "class": [ "data.frame" ], "fields": [ "markname", "trt1", "trt2", "trt3" ], "rows": 19, "table": true, "tojson": true }, { "name": "snp_example_missing", "title": "Example SNP summary dataset with missing values", "object": "snp_example_missing", "class": [ "data.frame" ], "fields": [ "markname", "trt1", "trt2", "trt3" ], "rows": 19, "table": true, "tojson": true } ], "_help": [ { "page": "fishp", "title": "Calculate Fisher's method p-value and meta-analysis statistics", "topics": [ "fishp" ] }, { "page": "generate_random_p_values", "title": "Generates a list of random p-values with mixed significant and insignificant values", "topics": [ "generate_random_p_values" ] }, { "page": "polycorr", "title": "Calculate Polychoric Correlations", "topics": [ "polycorr" ] }, { "page": "pvalues_to_zscores", "title": "Convert P-values to Z-scores", "topics": [ "pvalues_to_zscores" ] }, { "page": "snp_example", "title": "Example SNP summary dataset", "topics": [ "snp_example" ] }, { "page": "snp_example_missing", "title": "Example SNP summary dataset with missing values", "topics": [ "snp_example_missing" ] }, { "page": "tetracorr", "title": "Calculate Tetrachoric Correlations", "topics": [ "tetracorr" ] } ], "_readme": "https://github.com/wsjung/corrmeta/raw/HEAD/README.md", "_rundeps": [ "admisc", "cli", "cpp11", "dplyr", "generics", "glue", "lattice", "lifecycle", "magrittr", "Matrix", "mvtnorm", "pillar", "pkgconfig", "polycor", "purrr", "R6", "rlang", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr" ], "_vignettes": [ { "source": "vignette.Rmd", "filename": "vignette.html", "title": "Basic correlated meta-analysis with corrmeta", "author": "Woo Jung", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Install from CRAN", "Install from Github", "Load the package", "Simple example", "Preprocessing", "Load data", "Correlated meta-analysis", "Fisher's method", "Example with missing samples", "Session info", "References" ], "created": "2025-10-24 16:32:35", "modified": "2025-10-24 16:32:35", "commits": 1 } ], "_score": 4, "_indexed": true, "_nocasepkg": "corrmeta", "_universes": [ "wsjung" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.1", "date": "2026-05-25T07:58:38.000Z", "distro": "noble", "commit": "5b32ed1b2af14d19718dc4f87c666655615ac4b6", "fileid": "16ca981143607e3f0ece01b54f761d3fd7f2fd2bb4d0fa1393d554e3a0ec8c19", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wsjung/actions/runs/26389847301" }, { "r": "4.6.0", "os": "linux", "version": "1.0.1", "date": "2026-05-25T07:58:32.000Z", "distro": "noble", "commit": "5b32ed1b2af14d19718dc4f87c666655615ac4b6", "fileid": "a391db043a1b61e0453a27278a7c0658002c52b9686b71024074bfeab249cca2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wsjung/actions/runs/26389847301" }, { "r": "4.5.3", "os": "mac", "version": "1.0.1", "date": "2026-05-25T07:58:31.000Z", "commit": "5b32ed1b2af14d19718dc4f87c666655615ac4b6", "fileid": "5a13e2fd23edcd90491221f0e33b895f36f1cb3ca2023bc42b0141dbc7ff983e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wsjung/actions/runs/26389847301" }, { "r": "4.6.0", "os": "mac", "version": "1.0.1", "date": "2026-05-25T07:58:15.000Z", "commit": "5b32ed1b2af14d19718dc4f87c666655615ac4b6", "fileid": "efebd30100d2dadc4744ddf87377fb0d0afa57ef6a37dc6e6cf03b34a8c567b9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wsjung/actions/runs/26389847301" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.1", "date": "2026-05-25T07:58:34.000Z", "commit": "5b32ed1b2af14d19718dc4f87c666655615ac4b6", "fileid": "048e60a13070accfb4f8cf3347f6843fef79e5118fc5cf5243ac91c1bbdbd362", "status": "success", "buildurl": "https://github.com/r-universe/wsjung/actions/runs/26389847301" }, { "r": "4.7.0", "os": "win", "version": "1.0.1", "date": "2026-05-25T07:57:56.000Z", "commit": "5b32ed1b2af14d19718dc4f87c666655615ac4b6", "fileid": "13b3e83157d60448234d04e2b90993a559288267b5d418e0f59420d8d1f2db35", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wsjung/actions/runs/26389847301" }, { "r": "4.5.3", "os": "win", "version": "1.0.1", "date": "2026-05-25T07:57:54.000Z", "commit": "5b32ed1b2af14d19718dc4f87c666655615ac4b6", "fileid": "264898daadab97a139eae81831023d5db80014d8d1c76bf4521a5e1b2cd0581d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wsjung/actions/runs/26389847301" }, { "r": "4.6.0", "os": "win", "version": "1.0.1", "date": "2026-05-25T07:57:39.000Z", "commit": "5b32ed1b2af14d19718dc4f87c666655615ac4b6", "fileid": "3e3f7136fb5235c52b27cfb672dcae9f7744c914483bf00f6f911ca2a608b831", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wsjung/actions/runs/26389847301" } ] }